WDR36

Protein-coding gene in the species Homo sapiens
WDR36
Identifiers
AliasesWDR36, GLC1G, TA-WDRP, TAWDRP, UTP21, WD repeat domain 36
External IDsOMIM: 609669; MGI: 1917819; HomoloGene: 6536; GeneCards: WDR36; OMA:WDR36 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for WDR36
Genomic location for WDR36
Band5q22.1Start111,092,321 bp[1]
End111,130,502 bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for WDR36
Genomic location for WDR36
Band18|18 B1Start32,970,278 bp[2]
End33,000,647 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • tibialis anterior muscle

  • deltoid muscle

  • skin of arm

  • pancreatic epithelial cell

  • testicle

  • parietal pleura

  • germinal epithelium

  • gonad

  • mucosa of ileum
Top expressed in
  • primary oocyte

  • epiblast

  • lumbar spinal ganglion

  • primitive streak

  • secondary oocyte

  • spermatocyte

  • endothelial cell of lymphatic vessel

  • embryo

  • morula

  • abdominal wall
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
  • RNA binding
Cellular component
  • nucleolus
  • nucleus
  • nucleoplasm
  • small-subunit processome
  • Pwp2p-containing subcomplex of 90S preribosome
Biological process
  • retina homeostasis
  • regulation of axon extension
  • ribosome biogenesis
  • response to stimulus
  • visual perception
  • rRNA processing
  • biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

134430

225348

Ensembl

ENSG00000134987

ENSMUSG00000038299

UniProt

Q8NI36

n/a

RefSeq (mRNA)

NM_139281

NM_001110015
NM_001110016
NM_144863

RefSeq (protein)

NP_644810

n/a

Location (UCSC)Chr 5: 111.09 – 111.13 MbChr 18: 32.97 – 33 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

WD repeat-containing protein 36 is a protein that in humans is encoded by the WDR36 gene.[5][6][7]

This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Mutations in this gene have been associated with adult-onset primary open-angle glaucoma (POAG).[7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000134987 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000038299 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Bernstein KA, Gallagher JE, Mitchell BM, Granneman S, Baserga SJ (Dec 2004). "The small-subunit processome is a ribosome assembly intermediate". Eukaryot Cell. 3 (6): 1619–26. doi:10.1128/EC.3.6.1619-1626.2004. PMC 539036. PMID 15590835.
  6. ^ Monemi S, Spaeth G, DaSilva A, Popinchalk S, Ilitchev E, Liebmann J, Ritch R, Heon E, Crick RP, Child A, Sarfarazi M (Mar 2005). "Identification of a novel adult-onset primary open-angle glaucoma (POAG) gene on 5q22.1". Hum Mol Genet. 14 (6): 725–33. CiteSeerX 10.1.1.542.5801. doi:10.1093/hmg/ddi068. PMID 15677485.
  7. ^ a b "Entrez Gene: WDR36 WD repeat domain 36".

Further reading

  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Mao M, Biery MC, Kobayashi SV, et al. (2005). "T lymphocyte activation gene identification by coregulated expression on DNA microarrays". Genomics. 83 (6): 989–99. doi:10.1016/j.ygeno.2003.12.019. PMID 15177553.
  • Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
  • Pang CP, Fan BJ, Canlas O, et al. (2006). "A genome-wide scan maps a novel juvenile-onset primary open angle glaucoma locus to chromosome 5q". Mol. Vis. 12: 85–92. PMID 16518310.
  • Hauser MA, Allingham RR, Linkroum K, et al. (2006). "Distribution of WDR36 DNA sequence variants in patients with primary open-angle glaucoma". Invest. Ophthalmol. Vis. Sci. 47 (6): 2542–6. doi:10.1167/iovs.05-1476. PMID 16723468.
  • Hewitt AW, Dimasi DP, Mackey DA, Craig JE (2006). "A Glaucoma Case-control Study of the WDR36 Gene D658G sequence variant". Am. J. Ophthalmol. 142 (2): 324–5. doi:10.1016/j.ajo.2006.02.041. PMID 16876519.
  • Kramer PL, Samples JR, Monemi S, et al. (2006). "The role of the WDR36 gene on chromosome 5q22.1 in a large family with primary open-angle glaucoma mapped to this region". Arch. Ophthalmol. 124 (9): 1328–31. doi:10.1001/archopht.124.9.1328. PMID 16966629.
  • Weisschuh N, Wolf C, Wissinger B, Gramer E (2007). "Variations in the WDR36 gene in German patients with normal tension glaucoma". Mol. Vis. 13: 724–9. PMC 2765470. PMID 17563723.
  • Miyazawa A, Fuse N, Mengkegale M, et al. (2007). "Association between primary open-angle glaucoma and WDR36 DNA sequence variants in Japanese". Mol. Vis. 13: 1912–9. PMID 17960130.


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